Selected Publications
Only recent work listed below. A complete list of publications can be found at: Google Scholar
“Designing broad-spectrum anti-HIV-1 gRNAs to target patient-derived variants”
W Dampier, NT Sullivan, CH Chung, JC Mell, MR Nonnemacher, and B Wigdahl
Scientific Reports 7 (1), 14413, 2017
“Immunomodulatory Effects of Human Cryopreserved Viable Amniotic Membrane in a Pro-Inflammatory Environment In Vitro”
CE Witherel, T Yu, M Concannon, W Dampier, KL Spiller
Cellular and Molecular Bioengineering 10 (5), 451-462, October 2017
“Specific amino acids in HIV-1 Vpr are significantly associated with differences in patient neurocognitive status”
W Dampier, GC Antell, B Aiamkitsumrit, MR Nonnemacher, JM Jacobson, ... Journal of neurovirology 23 (1), 113-124
“Evidence of Divergent Amino Acid Usage in Comparative Analyses of R5-and X4-Associated HIV-1 Vpr Sequences”
GC Antell, W Dampier, B Aiamkitsumrit, MR Nonnemacher, V Pirrone, W Zhong, K Kercher, S Passic, JW Williams, T James, KN Devlin, T Giovannetti, DJ Libon, Z Szep, GD Ehrlich, B Wigdahl, FC Krebs
International Journal of Genomics 23(1):113-124, July 2017
"A community computational challenge to predict the activity of pairs of compounds"
Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, Mattioli M, Alvarez MJ, Shen Y; NCI-DREAM Community, Gallahan D, Singer D, Saez-Rodriguez J, Xie Y, Stolovitzky G, Califano A
Nat Biotechnol.; 32(12):1213-22, Dec 2014
"Defining differential genetic signatures in CXCR4- and the CCR5-utilizing HIV-1 co-linear sequences"
Aiamkitsumrit B, Dampier W, Martin-Garcia J, Nonnemacher MR, Pirrone V, Ivanova T, Zhong W, Kilareski E, Aldigun H, Frantz B, Rimbey M, Wojno A, Passic S, Williams JW, Shah S, Blakey B, Parikh N, Jacobson JM, Moldover B, Wigdahl B
PLoS One; 9(9):e107389, Sep 29, 2014
"Bioinformatic analysis of HIV-1 entry and pathogenesis"
Aiamkitsumrit B, Dampier W, Antell G, Rivera N, Martin-Garcia J, Pirrone V, Nonnemacher MR, Wigdahl B
Curr HIV Res.; 12(2):132-61. Review, 2014
PubMed PMID: 24862329; PubMed Central PMCID: PMC4382797
"Cocaine Alters Cytokine Profiles in HIV-1–Infected African American Individuals in the DrexelMed HIV/AIDS Genetic Analysis Cohort"
Parikh N, Dampier W, Feng R, Passic S, Zhong W, Frantz B, Blakey B, Aiamkitsumrit B, Pirrone V, Nonnemacher M, Jacobson J, Wigdahl B
Journal of Acquired Immune Deficiency Syndromes 66 (3), 256-264, 2014
"HIV Excision Utilizing CRISPR/Cas9 Technology: Attacking the Proviral Quasispecies in Reservoirs to Achieve a Cure"
Dampier, W., Nonnemacher, M.R., Sullivan, N.T., Jacobson, J.M., and B. Wigdahl
MOJ Immunology, 1(4), pii: 00022, 2014
"Identification of common biological pathways and drug targets across multiple respiratory viruses based on human host gene expression analysis"
Smith S. B, Dampier W, Tozeren A, Brown J. R, and M. Magid-Slav
PloS One 7(3): e33174, 2012
"Large-scale integration of microarray data reveals genes and pathways common to multiple cancer types"
Dawany N, Dampier W, and Tozeren A
International Journal of Cancer, 128(12): 2881-2891, 2011
"Host sequence motifs shared by HIV predict response to antiretroviral therapy"
Dampier W, Evans P, Ungar L, Tozeren A
BMC Med Genomics; 2:47. doi: 10.1186/1755-8794-2-4, Jul 23, 2009
"Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs"
Evans P, Dampier W, Ungar L, Tozeren A
BMC Med Genomics; 2:27. doi: 10.1186/1755-8794-2-27, May 18, 2009
"Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets"
Gormley M, Dampier W, Ertel A, Karacali B, and Tozeren A
BMC Bioinformatics, 8: 415, 2007
"Signaling perturbations induced by invading H. pylori proteins in the host epithelial cells: A mathematical modeling approach"
Dampier W, Tozeren A
Journal of Theoretical Biology 248 (1), 130-144, 2007